Software

tandem

tandem_icon





tandem is a software for the automatic binning of microsatellite allele sizes.
Find out more here or download directly.


Scripts

hp_plotter.rb enables you to plot the hydropathicity of a whole batch of amino acid sequences using a sliding window of flexible size.
hp_plotter.rb
hp_plotter_manual.pdf

bar_plotter.rb produces scalable vector graphics barplots from STRUCTURE output. You can choose colors yourself.
bar_plotter.rb
bar_plotter_manual.pdf
colorlist.txt (example file)

tpsrename.rb modifies tps files produced by Jim Rohlf's TPS series (used for geometric morphometrics) in a way that individual's ID numbers in the TPS file are replaced with the file names of the images. This facilitates its use in subsequent analysis software, such as PAST. The original file remains untouched, a separate output file is written.
tpsrename.rb

tpssplit.rb splits tps files into single files for every image, whereby files are named after the individual's ID numbers. The original file remains untouched.
tpssplit.rb