/*written by Michael Matschiner, 05/26/2009*/
/*send feedback to michael.matschiner-at-unibas.ch*/

/*This code is intended for import of data into the 'sample' table of the MySQL
database 'gene_sample' running on evo-lutra.zoo.unibas.ch. Data is imported from
the file addToSample.csv, which needs to be correctly formatted for successful
import.
A template Excel file with individual sheets for every database table can be found at
www.evolution.unibas.ch/salzburger/protocols.htm. You'll need to save the respective
sheet in csv format and change the filename specified below accordingly.*/

LOAD DATA LOCAL INFILE "/Users/michaelmatschiner/Documents/addToSample.csv"
INTO TABLE sample FIELDS TERMINATED BY "," ENCLOSED BY "\""
LINES TERMINATED BY "\r"
IGNORE 5 LINES
(@specimen.name, type, @dummy1, name, alternative_names, box_name, plate_name, row, col, bottle_name, tube_name, tank_number)
SET specimen_id = (SELECT id FROM specimen WHERE name = @specimen.name)