/*written by Michael Matschiner, 08/05/2009*/
/*send feedback to michael.matschiner-at-unibas.ch*/

/*This code is intended for import of data into the 'primer' table of the MySQL
database 'gene_sample' running on evo-lutra.zoo.unibas.ch. Data is imported from
the file addToPrimer.csv, which needs to be correctly formatted for successful
import.
A template Excel file with individual sheets for every database table can be found at
www.evolution.unibas.ch/salzburger/protocols.htm. You'll need to save the respective
sheet in csv format and change the filename specified below accordingly.*/

LOAD DATA LOCAL INFILE "/Users/michaelmatschiner/Documents/addToPrimer.csv"
INTO TABLE primer FIELDS TERMINATED BY "," ENCLOSED BY "\""
LINES TERMINATED BY "\r"
IGNORE 5 LINES
(name, direction, sequence, ordered_by, @date_ordered, company, fluorescent_label, melting_point, box_name, row, col, @reference.name)
SET reference_id = (SELECT id FROM reference WHERE name = @reference.name),
    date_ordered = str_to_date(@date_ordered,'%Y-%m-%d')